This seems to become a long drawn out process... The new PSU blew up as well and I will be giving the store a call on monday.

Either way, I spent the night installing the system on the new harddrive so that might improve performance slightly. At least after all the initial quirks are resolved.

If you run into anomalies with the site, please contact me so I can look at it. It now runs under Apache 2 and a newer PHP version so there might be some things that need resolving.